PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009779433.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 262aa    MW: 30530.1 Da    PI: 6.0646
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009779433.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.46.6e-2587176190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++  +++++    + + tr gC a l+v ++ ++kw+vtk+++eHnH+l+
  XP_009779433.1  87 DFYMAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYIHRKDR-VlpPPPATREGCPAILRVALR-ESKWVVTKFVEEHNHALM 176
                     6******************************************98883332.2448899**************.9***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2287176IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGFYKSDVAM GSPSSPAFGL DERKDFPPVE SNDDHGYFDE ELTTDMDMYI AEDDKCLGHS  60
NGEQTSSDDA IEPQIGMEFN SRDDARDFYM AYGRRIGFTV RIHHNRRSRI NNVVIGQDFV  120
CSKEGFREKK YIHRKDRVLP PPPATREGCP AILRVALRES KWVVTKFVEE HNHALMSPSK  180
VPWRGSTKKL VSQDEKDQRI RELTLELYNE RQRCKRRCAA YQEQLRTLLK FIEDHTDHLS  240
RSVEEAVQRV KELDNERLEE SD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210215RQRCKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779431.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_009779432.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_009779433.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
RefseqXP_016440133.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
RefseqXP_016440134.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
RefseqXP_016440135.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X1
TrEMBLA0A068U6N11e-133A0A068U6N1_COFCA; Uncharacterized protein
STRINGVIT_00s0174g00140.t011e-119(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.13e-37FAR1 family protein